If I understand your problem, you want to rapid to the next level of drill depths.
Start your clearance plain peck cycle your chosen minimum above material, use G98. And for each different drill have your R word below the material just above the last depth for the R plain of the next drill and its depth. If drill breakage is a risk, add a program stop M0 after each drill before next tool change to check before starting next drill sequence.
If your post & CAM software will not make this type of output, make those few edits by hand.
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