My ETS has a carbide top. The issue is that it's not guaranteed to be parallel with the base like the one Tormach sells. On my unit the mfg has a couple of set screws mounted in the base so that it can be adjusted parallel to what ever surface it' mounted on - not very convenient.
As received without using the set screws to adjust parallelism there was about 0.004" variance across my carbide probing surface due to parallelism between it & the base. Rather than fuss with these set screws I made sure the ETS mounting surface was flat & smooth then mounted the ETS into my grinder & ground the carbide probing surface to be parallel with the base.
I just held the base on the grinder and did not constrain the probing surface while grinding. This worked fine & I was able to get the parallelism under 2 tenths.
You really need to use a ball probe to check the parallelism & either adjust it parallel using the set screws in the base or grind it parallel like I did. I'm thinking MFchief might be experiencing this issue whereas setting zero using the spindle is pressing the ETS across an wide area vs probing with a tool pressing the ETS at a single point. If your ETS probing surface is not parallel with the table, or whatever it's placed on, you will get a variance unless using a single point probe while probing the same point on the ETS.
MFcheif, it looks like in your pictures you have mounted the probe to a sub-plate of AL. This could be exacerbating your problem if this plate is not parallel. At the same time you could use this setup to get things parallel. Just probe the ETS with a ball and adjust the parallelism using the the set screws between the ETS base & your AL sub-plate? Apologies if this was your intentions in the first place.