I'm not sure this is entirely true. On an R8, the straight portion of the collet/holder/whatever has a tolerance of 0.9490" - 0.9495" so right there is 5 tenths potential "slop" in that upper portion, and I am sure that the straight portion in the bore inside the spindle has a similar tolerance and undoubtedly a bit of designed in clearance. So there is not a "tight" fit there anyway and if needed, grinding another tenth or two out of that portion will have no detriment that I can see. The tapered portion of the tool would be able to "straighten" things out if re-ground. Indeed, a few years ago, Dave Decaussin of Fadal fame designed and made some very nice little CNC machining centers that used tool holders he called "Cat R8". These tool holders used only the tapered portion of the R8 and completely eliminated the upper straight portion of the typical R8 tool holder. Grinding that portion of the bore would pretty much just do the same thing and eliminate it from location the tools.
Look about 8:40 to see the Cat R8 tool holders.
https://youtu.be/b-y03hhCCME?t=519