The Wire application is fickle about things being neat. (rectangular & parallel to the machine).
Your best bet is to create some lines surrounding the area to cut.
Then use the 4-Axis, Wireframe option in Open Profile,
and only select the bottom line. It will find the sides & top.
Select the end where you want the path to start.
Set the top & bottom plane in Cutting Parameters to define where
the output points are generated.
Hope that helps
"Of course, that's just my opinion. I could be wrong!"
T Briggs (CAM dude) - Siemens PLM Software