Hopefully, I understand you correct, if the Z offset you are talking is measure the tool since you don't tool eye? If that's a yes, OK just bring the tool up to the face(feel the tool with paper..blah blah.... you in the business longer enough I don't think I have to tell you what to do), then go to offset page, highlight Z offset you want, you should see a TEACH..... hit that done. Repeat the same for next tool. Think you can do that for X too.
Get back see where you are.
The best way to learn is trial error.