Both My X & Y are set up wit the exact same rack, pinion size, & belt reductions so they are identical. I started with movements of about 12" so I could accurately measure it with a vernier caliper. Then moved each axis the entire length of my tables capacity & measured with a tape. Even as small an amount as .005 per foot will nearly be 1/16" of error in 10'.
Doesn't sound like much but it can cause real problems
A slight problem I ran into once I had my table dialed in. Take your pictured part of a square with a circle burned inside. Keep In mind I am cutting with Oxy/fuel. I drew a teat part very much like yours 4" square with a 2" center hole For a particular torch tip I adjusted the kerf in Sheetcam till it cut a 4" square +/- .005 measuring with dial calipers. The center hole always ended up something like 1.980. In other words I could get the outer dimention near perfect but the ID always ended up small.
I played with it enough on different size inner & outer profiles till I determined The inner remained that .020 or so small no matter what size the part. The fix: I have to make all drawings of Id profiles about 0.020 oversize.
It's not a real problem for me as I run a production oriented shop & pretty much burn the same 50 or so parts over & over.
I could have achieved the same results by setting up a second tool with different kerf compensation for ID profiles. I decided it would be easier to draw it once & not have to remember to use 2 tool profiles.
I don't know if this is common or if it has something to do with OD usually cutting CCW & ID CW. I didn't play around with that either, again because I didn't want to have to change the default cut direction every time I set up a part.
If it works.....Don't fix it!