I'm not a fan of using wood for cnc machines for anything other than the spoilboard. As a suggestion why don't you pick up some 50mm x 50mm steel square and bolt it together. The Chinese rails and ballscrews will have greater tolerance and accuracy than anything you'll make out of wood without major effort, and with using steel, you can shim where you need to to get it perfectly aligned.
Be aware though, if whatever your machine is sitting on has any degree of movement or flex, this will manifest itself in your machine. So planning the machine also means planning how to reduce the effects of table movement or variations in the floor surface beneath the machine's frame.
cheers, Ian
It's rumoured that everytime someone buys a TB6560 based board, an engineer cries!