Yes you are not going to find this in any 3Ph drive manual
I did not say, but if your spindle motor is over 7.5Hp then you are not going to be running on single phase, so check this before you start
You can by pass the Transformer for the VFD Drive if it is not all ready, most machines would not be powering the VFD Drive through a Transformer this would not be normal, the Transformer is for the Drives Etc.
You still may need the transformer for the drives X Y Z axis I don't know what your voltage requirement's are for the Drives if you have a DC machine