What happens when you put the SMD board from the X onto the Y? I assume that the amps on your drives are still 8.0-8.2. Another idea is to change motors from one drive to the next. Just make sure that you get the wiring correct... I did this once and that is when I found that I had two Sigma motors and one Superior. All OK but they are not wired the same.
To me it looks like you have a short somewhere or your SMD's are not quite right. When I bench test the SMD I power it to 18V and check the voltage on the Q4 Q9 etc by putting the test lead on the case itself. This is the voltage that the motors see. I get about 6.5 for an off transistor and 9 for an on transistor. The voltages you gave are the difference in voltage. The 2.5 split on your X would probably give you 6.5 and 9 in reference to ground. I have one SMD board that I now use for parts that would turn on and off all transistors just like it should and the output voltages were close but it would eat the 2N6547 trasnsistors just for fun. I now just use it for parts in a pinch. It was either that or a hammer. Just stick with it. You will be amazed at what you learn. Never give up. And always double, triple check everything. Be very detailed & thorough in everything you do. If you drop a washer, FIND IT. Put all screws back in their original locations. Never do anything temporary. And make sure that machine is getting lube to all the places it needs. A clean lubed machine is also easier on all the legacy electronics.
-rob