Which of these boards do you have, the Red or Blue solder resist?
Do remember that the PWM chips are from Toshiba, I hope these are not Chinese bootleg.
These chips themselves are solid, but why someone could imagine gluing all three on the same PCB
with a common heat sink is what I don't understand, some manufacturers even stick a fan on the heat sink,
speaks volume of the art.
1. You will have to do a dead-reckoning of all PCB traces to the TB6560 chip.
2. Check if your PSU is not malfunctioning.
3. Pin 4 of TB6560AHQ is the enable input, & Pin 5 is the Reset input.
4. Ensure pin 4 is logic high to enable stepper functions, & pin 5 also high, taken this pin low
will reset the outputs to the motors.
At peak operations each chip draws 3.4Amps per phase so all three chip will require ~10.2Amps at peak loads.
Let's hope thermal cycling aren't causing some of the tracks or soldering to be come disjointed.
I must believe the way some of the tracks are laid may be contributing to this malfunctioning!
Good luck.
NOTE: I disclaim all of the above, even if it sets your CNC on fire.
Kind regards,
Hanspeter.