I think the "don't do that's" come along the lines of the fact that you can have issues involved that may not be the surface of the table alone. Your rise at the edges can come from the table levering up due to all that overhanging weight. We have long tables and kinda narrow saddles unless you know that is not the case then when you cut the table what you did was take a flat surface that was tilting a bit due to force and cut a nice convex surface into it. What happens later when you tighten up the gibs and it doesn't tilt as much now. I know this happens on mine because the weight of the vice obviously makes it more pronounced (0.0025 vs 0.001). Mine also leans front to back because the dovetails on the saddle are not exactly the same height. None of this can be corrected by cutting the table.
OTOH if the table surface is really boned that badly and you know it then I guess there isn't much you can do to make it worse right, but I would confirm this off the machine on a surface plate before I gave any thought to having the machine cut that surface in situ.
CNC: Making incorrect parts and breaking stuff, faster and with greater precision.