http://pminmo.com/3axis/OS3copper.pdf is a pdf document for the copper, selsct 100% for print size in the windows printer dialog.
The common wire on a 5 wire motor is for the positive of your motor supply. You will need to current limit with a resistor(s) since this isn't a current limiting board.
Your limit switch setup will work as long as you set the software appropriately.
D2 and D5 are just wiring points to expand from the lpt port.
I almost missed your post, as I don't scan the zone completely. My bulletin board http://www.pminmo.com/phpBB/ I review daily (as long as I have power, ice storm last week put me out for a couple of days....). It also allows others to review questions and answers since the topics are focused per boad.
Phil, Still too many interests, too many projects, and not enough time!!!!!!!!
Vist my websites - http://pminmo.com & http://millpcbs.com