Hi Redding -
Your "side view" image is a good snap shot of one of the issues with construction extrusion. The linear rail is bolted to quite thin and free edges. These deflect quite a bit under load so the section cannot achieve its global stiffness. Another issue with the free edges is that they vibrate which either can just be an annoying acoustic resonance or it can affect the machine performance if it vibrates too much. Since you are using construction extrusions it would be good to use their cast angles to help support the gantry connection better. End bolting of the extrusion pulls the connection together on thin edges that do not mate well. As a test, blue up the end of an extrusion and pull it up to the plate and see how much is actually touching. Or put a piece of paper in the connection and see how it witnesses...Then you will see that they may need a little lapping to get them to contact 100%...Cheers Peter