Now that I have got the indexer working and cutting from my files I will move on to stage two of the project. Setting up the indexer on its own axis "A" with it's own Gecko Drive and power supply. I have ordered the Gecko 201, power supply and bulkhead connector from the guys at CNCRouterParts.
Basically what I will do is make another copy of my current Mach3 profile that I use all the time, rename the file to "Indexer". Switch the A-Axis that is now slaved to the X-Axis to a "B-Axis". That would allow me to assign the A-Axis to the indexer and check off the rotary function. Once all is good in Mach3 I would be able to run the indexer without having to unplug the Y-Axis and replug the indexer in. Basically I will be doing exactly what Elking has done with his setup.
Then I want to purchase a cnc pendant to control the machine, make a touch off plate, and finish off the bottom section of the table as per plans. After I get those items wrapped up I will probably purchase the extension kit and turn the table into a 8' long table.