Thanks for the help, I know about tramming and its not what I'm after.
The cnc is brand new and haven't done any real cut yet. Since the tabletop is so large (34"x46") I was thinking how to verify if the depth of cut is equal at any place of the tabletop. I did a cut of a rectangle 1/8" deep and measuring the depth with a micrometer it shows 1/8" all along the groove. So its good.
However I was thinking since I have a probe which establishes the 0" point of the surface before I start a cut if it was possible to use the probe. Perhaps with a script which registers the point at one end and then compares that value with a new value at another point of the table?