Jvarga- I see. The female header is on the LCD, the SuperPID board actually has a male header (pins).
I can't say if the short pins will be good enough to go into the female header on the display and be reliable, my gut feeling is that it won't be good enough. As a test you could try connecting it to see if the 1 metre cable will work, that is still an issue as LCDs generally do not like long cabling. If it still works ok with a 1 metre cable you could then look at connection options at the LCD end.
Arbo- Thanks for the suggestion of shielded ribbon cable, that should indeed be better than the non-shielded type to stop the LCD cable picking up interference from power and motor drivers etc.
However that does not address the other issue of cable capacitance, as the LCD signals are high speed and there can be problems with crosstalk and data corruption once the cable gets too long. Like most of my code the LCD system was designed with large safety margins so a 1 metre cable may still work fine, but I have not tested it and can make no guarantees.