My choice was largely based on the availability of good deals on quality ball screws. I also figured that the larger diameter wouldn't hurt on a longer axis and the one that carries the most weight.
I guess I'll have to see if it causes problems for me. If it does then I'll have to replace it with a fiber pitch screw and use the old one on another build.
You are right that speed is of little concern to me unless it causes a cutting problem. My main goal is to be able to cut a mold cavity in 6061 and getting it right first time. 6061 is not super expensive but I can't afford to be screwing up 1.5" x 8" x 36" slabs on a regular basis.
It would probably be cheaper to upgrade a stepper motor than to buy a new ball screw though. When I bought my stepper motors I was building a different machine with slightly different cutting goals and a lighter spindle. They were on my list of components to revisit to see if there were opportunities to improve anyway.
I keep meaning to read up more on why metal cutting machines use much larger stepper (or servo) motors to see if I was missing something. I can't shake the nagging thought that more holding torque would be helpful for cutting metal.